Jeffrey E. Barrick : rechercher sur Z-Library

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1

Genome evolution and adaptation in a long-term experiment with Escherichia coli

Barrick, Jeffrey E., Yu, Dong Su, Yoon, Sung Ho, Jeong, Haeyoung, Oh, Tae Kwang, Schneider, Dominique, Lenski, Richard E., Kim, Jihyun F.

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 376 KB

english, 2009

2

The dynamics of molecular evolution over 60,000 generations

Good, Benjamin H., McDonald, Michael J., Barrick, Jeffrey E., Lenski, Richard E., Desai, Michael M.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 12.69 MB

english, 2017

3

Genetic engineering of bee gut microbiome bacteria with a toolkit for modular assembly of broad-host-range plasmids

Leonard, Sean P., Perutka, Jiri, Powell, J Elijah, Geng, Peng, Richhart, Darby, Byrom, Michelle, Kar, Shaunak, Davies, Bryan W., Ellington, Andrew D., Moran, Nancy, Barrick, Jeffrey E

Journal:

ACS Synthetic Biology

Année:

2018

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2018

4

Physical model of the immune response of bacteria against bacteriophage through the adaptive CRISPR-Cas immune system

Han, Pu, Niestemski, Liang Ren, Barrick, Jeffrey E, Deem, Michael W

Journal:

Physical Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2013

5

Scanning electron microscope inverse imaging technique for positive image photomicrographs of microfossil molds

Over, D. Jeffrey, Grimson, Mark, Barrick, James E.

Journal:

Journal of Paleontology

Année:

1991

Langue:

english

Fichier:

PDF, 1.19 MB

english, 1991

6

Engineered symbionts activate honey bee immunity and limit pathogens

Leonard, Sean P., Powell, J. Elijah, Perutka, Jiri, Geng, Peng, Heckmann, Luke C., Horak, Richard D., Davies, Bryan W., Ellington, Andrew D., Barrick, Jeffrey E., Moran, Nancy A.

Journal:

Année:

2020

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2020

7

Genomic analysis of a key innovation in an experimental Escherichia coli population

Blount, Zachary D., Barrick, Jeffrey E., Davidson, Carla J., Lenski, Richard E.

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 589 KB

english, 2012

8

Decaffeination and Measurement of Caffeine Content by Addicted Escherichia coli with a Refactored N -Demethylation Operon from Pseudomonas putida CBB5

Quandt, Erik M., Hammerling, Michael J., Summers, Ryan M., Otoupal, Peter B., Slater, Ben, Alnahhas, Razan N., Dasgupta, Aurko, Bachman, James L., Subramanian, Mani V., Barrick, Jeffrey E.

Journal:

ACS Synthetic Biology

Année:

2013

Langue:

english

Fichier:

PDF, 430 KB

english, 2013

9

Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures

Deatherage, Daniel E., Kepner, Jamie L., Bennett, Albert F., Lenski, Richard E., Barrick, Jeffrey E.

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 841 KB

english, 2017

10

Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides

Leon, Dacia, D'Alton, Simon, Quandt, Erik M., Barrick, Jeffrey E., Matic, Ivan

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 2.68 MB

english, 2018

11

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism

Elizabeth E. Regulski, Ryan H. Moy, Zasha Weinberg, Jeffrey E. Barrick, Zizhen Yao, Walter L. Ruzzo, Ronald R. Breaker

Journal:

Molecular Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 589 KB

english, 2008

12

An mRNA structure that controls gene expression by binding S-adenosylmethionine

Winkler, Wade C, Nahvi, Ali, Sudarsan, Narasimhan, Barrick, Jeffrey E, Breaker, Ronald R

Journal:

Natural Structural Biology

Année:

2003

Langue:

english

Fichier:

PDF, 846 KB

english, 2003

13

A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain

Roth, Adam, Winkler, Wade C, Regulski, Elizabeth E, Lee, Bobby W K, Lim, Jinsoo, Jona, Inbal, Barrick, Jeffrey E, Ritwik, Ankita, Kim, Jane N, Welz, Rüdiger

Journal:

Nature Structural and Molecular Biology

Année:

2007

Langue:

english

Fichier:

PDF, 369 KB

english, 2007

14

The Power of Riboswitches

Barrick, Jeffrey E., Breaker, Ronald R.

Journal:

Scientific American

Année:

2007

Langue:

english

Fichier:

PDF, 652 KB

english, 2007

15

Sequence analysis of an artificial family of RNA-binding peptides

Jeffrey E. Barrick, Richard W. Roberts

Journal:

Protein Science

Année:

2002

Langue:

english

Fichier:

PDF, 260 KB

english, 2002

16

Nanostructured Hybrid Transparent Conductive Films with Antibacterial Properties

Kholmanov, Iskandar N., Stoller, Meryl D., Edgeworth, Jonathan, Lee, Wi Hyoung, Li, Huifeng, Lee, Jongho, Barnhart, Craig, Potts, Jeffrey R., Piner, Richard, Akinwande, Deji, Barrick, Jeffrey E., Ruof

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1.83 MB

english, 2012

17

Selection of RNA-Binding Peptides Using mRNA-Peptide Fusions

Jeffrey E. Barrick, Terry T. Takahashi, Andrey Balakin, Richard W. Roberts

Journal:

Année:

2001

Langue:

english

Fichier:

PDF, 163 KB

english, 2001

18

Riboswitches Control Fundamental Biochemical Pathways in Bacillus subtilis and Other Bacteria

Maumita Mandal, Benjamin Boese, Jeffrey E Barrick, Wade C Winkler, Ronald R Breaker

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 689 KB

english, 2003

19

SPIE Proceedings [SPIE SPIE Astronomical Telescopes + Instrumentation - Amsterdam, Netherlands (Sunday 1 July 2012)] High Energy, Optical, and Infrared Detectors for Astronomy V - Persistence and charge diffusion in an E2V CCD42-90 deep-depletion CCD

Barrick, Gregory A., Ward, Jeffrey, Cuillandre, Jean-Charles, Holland, Andrew D., Beletic, James W.

Année:

2012

Langue:

english

Fichier:

PDF, 520 KB

english, 2012

20

The distributions, mechanisms, and structures of metabolite-binding riboswitches

Jeffrey E Barrick, Ronald R Breaker

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.21 MB

english, 2007

21

Evidence for a second class ofS-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

Keith A Corbino, Jeffrey E Barrick, Jinsoo Lim, Rüdiger Welz…

Journal:

Année:

2005

Langue:

english

Fichier:

PDF, 482 KB

english, 2005

22

Genome dynamics during experimental evolution

Barrick, Jeffrey E., Lenski, Richard E.

Journal:

Nature Reviews Genetics

Année:

2013

Langue:

english

Fichier:

PDF, 669 KB

english, 2013

23

Bacteriophages use an expanded genetic code on evolutionary paths to higher fitness

Hammerling, Michael J, Ellefson, Jared W, Boutz, Daniel R, Marcotte, Edward M, Ellington, Andrew D, Barrick, Jeffrey E

Journal:

Nature Chemical Biology

Année:

2014

Langue:

english

Fichier:

PDF, 419 KB

english, 2014

24

Achieving Specificity in Selected and Wild-Type N Peptide−RNA Complexes: The Importance of Discrimination against Noncognate RNA Targets †

Barrick, Jeffrey E., Roberts, Richard W.

Journal:

Année:

2003

Langue:

english

Fichier:

PDF, 234 KB

english, 2003

25

Engineering reduced evolutionary potential for synthetic biology

Renda, Brian A., Hammerling, Michael J., Barrick, Jeffrey E.

Journal:

Molecular BioSystems

Année:

2014

Langue:

english

Fichier:

PDF, 2.12 MB

english, 2014

26

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq

Barrick, Jeffrey E, Colburn, Geoffrey, Deatherage, Daniel E, Traverse, Charles C, Strand, Matthew D, Borges, Jordan J, Knoester, David B, Reba, Aaron, Meyer, Austin G

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2014

27

The case for decoupling assembly and submission standards to maintain a more flexible registry of biological parts

Alnahhas, Razan N, Slater, Ben, Huang, Yunle, Mortensen, Catherine, Monk, Jordan W, Okasheh, Yousef, Howard, Marco D, Gottel, Neil R, Hammerling, Michael J, Barrick, Jeffrey E

Journal:

Journal of Biological Engineering

Année:

2014

Langue:

english

Fichier:

PDF, 303 KB

english, 2014

28

Rapid evolution of silver nanoparticle resistance in Escherichia coli

Graves, Joseph L., Tajkarimi, Mehrdad, Cunningham, Quincy, Campbell, Adero, Nonga, Herve, Harrison, Scott H., Barrick, Jeffrey E.

Journal:

Frontiers in Genetics

Année:

2015

Langue:

english

Fichier:

PDF, 3.11 MB

english, 2015

29

Genome Instability Mediates the Loss of Key Traits by Acinetobacter baylyi ADP1 during Laboratory Evolution

Renda, Brian A., Dasgupta, Aurko, Leon, Dacia, Barrick, Jeffrey E., Zhulin, I. B.

Journal:

Journal of Bacteriology

Année:

2015

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2015

30

Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq

Deatherage, Daniel E., Traverse, Charles C., Wolf, Lindsey N., Barrick, Jeffrey E.

Journal:

Frontiers in Genetics

Année:

2015

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2015

31

Balancing Robustness and Evolvability

Lenski, Richard E., Barrick, Jeffrey E., Ofria, Charles

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 218 KB

english, 2006

32

A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes

Yao, Zizhen, Barrick, Jeffrey, Weinberg, Zasha, Neph, Shane, Breaker, Ronald, Tompa, Martin, Ruzzo, Walter L.

Journal:

PLoS Computational Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2007

33

Predicting the Genetic Stability of Engineered DNA Sequences with the EFM Calculator

Jack, Benjamin R., Leonard, Sean P., Mishler, Dennis M., Renda, Brian A., Leon, Dacia, Suárez, Gabriel A., Barrick, Jeffrey E.

Journal:

ACS Synthetic Biology

Année:

2015

Langue:

english

Fichier:

PDF, 907 KB

english, 2015

34

Draft Genome Sequence of the Bacterium Pseudomonas putida CBB5, Which Can Utilize Caffeine as a Sole Carbon and Nitrogen Source

Quandt, Erik M., Summers, Ryan M., Subramanian, Mani V., Barrick, Jeffrey E.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 171 KB

english, 2015

35

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Maddamsetti, Rohan, Hatcher, Philip J., Cruveiller, Stéphane, Médigue, Claudine, Barrick, Jeffrey E., Lenski, Richard E.

Journal:

Molecular Biology and Evolution

Année:

2015

Langue:

english

Fichier:

PDF, 304 KB

english, 2015

36

Single Cell Force Spectroscopy Analysis for Acinetobacter Baylyi Mutation Aggregation

Tajkarimi, Mehrdad M., Hung, Albert M., Harrison, Scott H., Barrick, Jeffrey E., Graves, Joseph L.

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 58 KB

english, 2015

37

Expanded genetic codes create new mutational routes to rifampicin resistance in Escherichia coli

Hammerling, Michael J., Gollihar, Jimmy, Mortensen, Catherine, Alnahhas, Razan N., Ellington, Andrew D., Barrick, Jeffrey E.

Journal:

Molecular Biology and Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 8.87 MB

english, 2016

38

Scanning Electron Microscope Inverse Imaging Technique for Positive Image Photomicrographs of Microfossil Molds

D. Jeffrey Over, Mark Grimson and James E. Barrick

Journal:

Journal of Paleontology

Année:

1991

Langue:

english

Fichier:

PDF, 322 KB

english, 1991

39

Tempo and mode of genome evolution in a 50,000-generation experiment

Tenaillon, Olivier, Barrick, Jeffrey E., Ribeck, Noah, Deatherage, Daniel E., Blanchard, Jeffrey L., Dasgupta, Aurko, Wu, Gabriel C., Wielgoss, Sébastien, Cruveiller, Stéphane, Médigue, Claudine, Schn

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 4.23 MB

english, 2016

40

Rapid and inexpensive evaluation of nonstandard amino acid incorporation in Escherichia coli

Monk, Jordan W, Leonard, Sean P., Brown, Colin W., Hammerling, Michael J., Mortensen, Catherine, Gutierrez, Alejandro E., Shin, Nathan Y., Watkins, Ella, Mishler, Dennis M., Barrick, Jeffrey E

Journal:

ACS Synthetic Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.57 MB

english, 2016

41

Reduced mutation rate and increased transformability of transposon-free Acinetobacter baylyi ADP1-ISx

Suárez, Gabriel A., Renda, Brian A., Dasgupta, Aurko, Barrick, Jeffrey E.

Journal:

Applied and Environmental Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 1.25 MB

english, 2017

42

Arresting Evolution

Bull, James J., Barrick, Jeffrey E.

Journal:

Trends in Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2017

43

Standing Genetic Variation in Contingency Loci Drives the Rapid Adaptation of Campylobacter jejuni to a Novel Host

Jerome, John P., Bell, Julia A., Plovanich-Jones, Anne E., Barrick, Jeffrey E., Brown, C. Titus, Mansfield, Linda S., Bereswill, Stefan

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2011

44

Predicting Growth Conditions from Internal Metabolic Fluxes in an In-Silico Model of E. coli

Sridhara, Viswanadham, Meyer, Austin G., Rai, Piyush, Barrick, Jeffrey E., Ravikumar, Pradeep, Segrè, Daniel, Wilke, Claus O., de Crécy-Lagard, Valerie

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 860 KB

english, 2014

45

Bacterial Production of Gellan Gum as a Do-It-Yourself Alternative to Agar

McGuffey, Jenna C., Leon, Dacia, Dhanji, Erum Z., Mishler, Dennis M., Barrick, Jeffrey E.

Journal:

Journal of Microbiology and Biology Education

Année:

2018

Langue:

english

Fichier:

PDF, 293 KB

english, 2018

46

Directed evolution of Escherichia coli with lower-than-natural plasmid mutation rates

Deatherage, Daniel E, Leon, Dacia, Rodriguez, Álvaro E, Omar, Salma K, Barrick, Jeffrey E

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 895 KB

english, 2018

47

Synthetic genome defenses against selfish DNA elements stabilize engineered bacteria against evolutionary failure

Geng, Peng, Leonard, Sean P., Mishler, Dennis M., Barrick, Jeffrey E

Journal:

ACS Synthetic Biology

Année:

2019

Langue:

english

Fichier:

PDF, 6.03 MB

english, 2019

48

Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria

Zhang, Xue, Deatherage, Daniel E., Zheng, Hao, Georgoulis, Stratton J., Barrick, Jeffrey E.

Journal:

Nature Communications

Année:

2019

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2019

49

Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria

Zhang, Xue, Deatherage, Daniel E., Zheng, Hao, Georgoulis, Stratton J., Barrick, Jeffrey E.

Journal:

Nature Communications

Année:

2019

Fichier:

PDF, 1.70 MB

2019

50

Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining

SuÃ¡rez, Gabriel A, Dugan, Kyle R, Renda, Brian A, Leonard, Sean P, Gangavarapu, LakshmiÂ Suryateja, Barrick, Jeffrey E

Journal:

Nucleic Acids Research

Année:

2020

Fichier:

PDF, 544 KB

2020